Translates the row names of eset to mouse Entrez IDs, the gene space
every clock operates in: identifiers of the given species are looked up in
the bundled gene table, and rat, human and macaque genes are then carried
over to mouse through 1:1 ortholog tables. Genes that do not map are
dropped; identifiers that collapse onto one Entrez ID are summed.
Arguments
- eset
An ExpressionSet object.
- species
One of "human", "mouse", "rat", "monkey".
- gene_mapping_type
Identifier type of the row names: "Ensembl", "Gene.Symbol", "Entrez", or "auto" (default) to detect it as the type with the most matches in the gene table. Ensembl IDs may carry a version suffix (
ENSMUSG00000000001.4); it is stripped when that is what makes them match.- verbose
Logical. Print progress messages. Default TRUE.